Cell Ranger7.1 (latest), printed on 04/01/2023
The cellranger multi pipeline analyzes multiple library types together, enabling more consistent cell calling between the V(D)J and gene expression data.
Visit the multi pipeline page to learn more about the arguments required to run cellranger multi.
Here are some example multi config CSVs to be used as inputs for running cellranger multi on T cell libraries enriched for gamma (TRG) and delta (TRD) chains. Make sure to replace
/path/to with the actual full path to your data, and edit any text in red according to the experiment's sample/library/file names.
|Libraries||Multi config CSV|
[vdj] reference,/path/to/vdj_reference [libraries] fastq_id,fastqs,lanes,feature_types,subsample_rate VDJ_GD_fastqs_id,path/to/vdj_GD_fastqs,1|2,VDJ-T-GD,