Cell Ranger4.0 (latest), printed on 04/12/2021
The cellranger vdj pipeline will generate
.vloupe files for Single Cell
V(D)J experiments. A
.vloupe file will be found in the
outs folder of
a completed cellranger vdj run.
Note that the
.vloupe files are not compatible with all versions of Loupe V(D)J Browser
and Loupe Browser. Loupe V(D)J Browser version 4.0 and Loupe Browser version 5.0 only
.vloupe files generated by Cell Ranger version 5.0 and above. To view
files from Cell Ranger version 4.0 or below you will need to use Loupe V(D)J Browser
version 3.0 and Loupe Browser version 4.2 or below.
You will still need to consult the Cell Ranger run summary file to view quality control data and other metadata about a particular run; this is not yet available in Loupe V(D)J Browser.