Cell Ranger , printed on 03/29/2020
The Chromium Single Cell Immune Profiling Software Suite is a complete package for assembling, analyzing, and visualizing V(D)J sequences and clonotypes, gene expression profiles, and Feature Barcoding technology enabled cell surface protein expression. The package includes Cell Ranger Analysis Pipelines, Loupe V(D)J Browser, and Loupe Cell Browser visualization tools.
Cell Ranger: V(D)J Pipelines
A set of analysis pipelines that perform sample demultiplexing, barcode processing, sequence assembly, and V(D)J annotation from Single Cell Immune Profiling data.
Loupe V(D)J Browser
An interactive visualization tool to investigate clonotypes, identify significant sequence mismatches, and verify read support from your single cell data.
Loupe Cell Browser
A visualization tool to analyze single cell gene expression data for finding significant genes, identifying cell types, and exploring substructure within cell clusters.