10x Genomics
Single Cell Immune Profiling

Cell Ranger , printed on 02/23/2019

Overview of Single Cell Immune Profiling Software

The Chromium Single Cell Immune Profiling Software Suite is a complete package for assembling, analyzing, and visualizing V(D)J sequences and clonotypes, gene expression profiles, and Feature Barcoding technology enabled cell surface protein expression. The package includes Cell Ranger Analysis Pipelines and Loupe V(D)J Browser and Loupe Cell Browser visualization tools.

For V(D)J Immune Repertoire Profiling

• Cell Ranger: V(D)J Pipelines
  A set of analysis pipelines that perform sample demultiplexing, barcode processing, sequence assembly, and V(D)J annotation from Single Cell Immune Profiling data.

• Loupe V(D)J Browser
  An interactive visualization tool to investigate clonotypes, identify significant sequence mismatches, and verify read support from your single cell data.

V(D)J + 5’ Gene Expression + Feature Barcoding for Cell Surface Protein Analysis

• V(D)J + 5′ Gene Expression + Feature Barcoding technology
  Guidance on how to run Cell Ranger Analysis Pipelines for the different libraries generated from the same sample, and integrate data with Loupe Cell Browser and Loupe V(D)J Browser.