Cell Ranger, printed on 01/19/2022
The Chromium Single Cell Immune Profiling Software Suite is a set of analysis and visualization tools for examining immune repertoire with gene expression and Feature Barcode data produced by the 10x Chromium Platform. The package includes Cell Ranger, Loupe V(D)J Browser, and Loupe Browser:
A set of analysis pipelines that perform sample demultiplexing, V(D)J transcript sequence assembly and annotation, gene expression and feature barcode analysis from Single Cell Immune Profiling data.
| INTRODUCTION | DOWNLOAD | TUTORIALS |
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What is Cell Ranger? What is Feature Barcode? What is High Throughput? Experimental Design |
Download Links System Requirements Installation |
V(D)J Tutorial |
| RUNNING PIPELINES | ALGORITHMS OVERVIEW | OTHER RESOURCES |
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Generating FASTQs V(D)J T, B Cell Analysis Gene Expression Analysis Understanding V(D)J Outputs |
Gene Expression V(D)J |
References Support Questions & Answers Datasets Glossary |
Loupe Browser is a visualization tool to interactively find significant genes, cell types and explore substructure in single cell data.
Loupe V(D)J Browser is an interactive visualization tool to investigate clonotypes, examine V(D)J transcripts and detect variants within clonotypes.