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Cell Ranger


10x Genomics
Chromium Single Cell Gene Expression

Choosing a Cell Ranger Pipeline

Cell Ranger provides a set of analysis pipelines that process Chromium Single Cell Gene Expression data to align reads, generate Feature Barcode matrices, perform clustering and other secondary analysis, and more.

Documentation by library type Cell Ranger pipeline
3' Gene Expression count
3' Targeted Gene Expression count
3' Gene Expression + Antibody/CRISPR Guide Capture count
Antibody Capture only count
3' Gene Expression + Cell Multiplexing (+ Antibody/CRISPR Guide Capture) multi
Fixed RNA Profiling Gene Expression (+ Antibody Capture) multi