Software  ›   overview
If your question is not answered here, please email us at:  support@10xgenomics.com

10x Genomics
Single Cell Gene Expression

System Requirements

Cell Ranger

Cell Ranger pipelines run on Linux systems that meet these minimum requirements:

Note:

The pipelines also run on clusters that meet these additional minimum requirements:

Software Dependencies

Most software dependencies come bundled in the Cell Ranger package. However, cellranger mkfastq also requires:

Resource Limits

LimitRecommendation
user open files 16k
system max files 10k per GB RAM available to Cell Ranger
user processes 64 per core available to Cell Ranger