Space Ranger, printed on 10/23/2021
The Visium Spatial Gene Expression Software Suite is a set of software
applications for analyzing and visualizing spatial gene expression data produced
by the 10x Genomics Visium Platform. The software suite includes Space Ranger and Loupe
Browser.
Analysis pipelines that perform sample demultiplexing, image
alignment, barcode processing, and gene counting.
| INTRODUCTION | DOWNLOAD | TUTORIALS |
|
What is Space Ranger? |
Download Links System Requirements Installation |
Loupe Browser |
| RUNNING PIPELINES | ALGORITHMS OVERVIEW | OTHER RESOURCES |
|
Computing Options mkfastq count (Spatial Gene Expression) aggr Understanding Output |
Image Processing Gene Expression |
Questions & Answers Datasets |
Easy-to-use visualization software that lets you quickly and
interactively find significant genes, cell types, and substructure within your
spatial gene expression data. No programming required.
| INTRODUCTION | DOWNLOAD | TUTORIALS |
| What is Loupe Browser? |
Download Link Installation |
Navigation Spatial Gene Expression Manual Slide Alignment |