HOME  ›   overview
If your question is not answered here, please email us at:  ${email.software}

10x Genomics
Spatial Gene Expression

New Releases!
×

Space Ranger 2.0 and Loupe 6.2 support CytAssist enabled Gene Expression analysis.

Overview of Visium Software

The Visium Spatial Gene Expression Software Suite is a set of software applications for analyzing and visualizing spatial Gene Expression (GEX) data produced by the 10x Genomics Visium Platform. The software suite includes Space Ranger and Loupe Browser.

Space Ranger

Analysis pipelines that perform sample demultiplexing, image alignment, barcode processing, and gene counting.

INTRODUCTION DOWNLOAD TUTORIALS
What is Space Ranger?
CytAssist for FFPE
Visium for FF

Download Links
System Requirements
Installation

Setup Space Ranger
count for FF
count for FFPE
RUNNING PIPELINES ALGORITHMS OTHER RESOURCES
Choosing Pipelines
Spatial GEX (FF)
CytAssist GEX
Outputs Overview
Gene Expression
Image Processing
Questions & Answers
Datasets
Glossary

Loupe Browser

Easy-to-use visualization software that offers interactive support for upstream image processing required for Space Ranger as well as downstream visualization and analysis of your spatial gene expression data. No programming required.

INTRODUCTION IMAGE PROCESSING TUTORIALS
What is Loupe Browser?
Download Link
Fiducial Alignment
CytAssist Image Alignment
Getting Started