Space Ranger, printed on 11/28/2022
The Visium Spatial Gene Expression Software Suite is a set of software
applications for analyzing and visualizing spatial Gene Expression (GEX) data produced
by the 10x Genomics Visium Platform. The software suite includes Space Ranger and Loupe
Browser.
Analysis pipelines that perform sample demultiplexing, image
alignment, barcode processing, and gene counting.
| INTRODUCTION | DOWNLOAD | TUTORIALS |
|
What is Space Ranger? CytAssist for FFPE Visium for FF |
Download Links System Requirements Installation |
Setup Space Ranger count for FF count for FFPE |
| RUNNING PIPELINES | ALGORITHMS | OTHER RESOURCES |
|
Choosing Pipelines Spatial GEX (FF) CytAssist GEX Outputs Overview |
Gene Expression Image Processing |
Questions & Answers Datasets Glossary |
Easy-to-use visualization software that offers interactive support for upstream image processing required for Space Ranger as well as downstream visualization and analysis of your spatial gene expression data. No programming required.
| INTRODUCTION | IMAGE PROCESSING | TUTORIALS |
|
What is Loupe Browser? Download Link |
Fiducial Alignment CytAssist Image Alignment |
Getting Started Spatial Reclustering |