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10x Genomics
Spatial Gene Expression

Overview of Visium Software

The Visium Spatial Gene Expression Software Suite is a set of software applications for analyzing and visualizing spatial gene expression data produced by the 10x Visium Platform. The software suite includes Space Ranger and Loupe Browser:

Space Ranger

Our set of analysis pipelines that perform sample demultiplexing, image alignment, barcode processing, and gene counting.

INTRODUCTION QUICK START TUTORIALS
What is Space Ranger?

Downloads
System Requirements
Installation

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RUNNING PIPELINES ALGORITHMS OVERVIEW OTHER RESOURCES
Computing Options
mkfastq
count (Spatial Gene Expression)
Understanding Output
Image Processing
Gene Expression
Questions & Answers
Datasets



Loupe Browser

Our easy-to-use visualization software that lets you quickly and interactively find significant genes, cell types, and substructure within your spatial gene expression data. No programming required.

INTRODUCTION QUICK START TUTORIALS
What is Loupe Browser? Download
Installation
Navigation
Spatial Gene Expression
Manual Slide Alignment