Software  ›   overview
If your question is not answered here, please email us at:  ${email.software}

10x Genomics
Spatial Gene Expression

Overview of Visium Software

The Visium Spatial Gene Expression Software Suite is a set of software applications for analyzing and visualizing spatial gene expression data produced by the 10x Visium Platform. The software suite includes Space Ranger and Loupe Browser:

Space Ranger

The 10x set of analysis pipelines that perform sample demultiplexing, image alignment, barcode processing, and gene counting.

INTRODUCTION DOWNLOAD TUTORIALS
What is Space Ranger?

Download Links
System Requirements
Installation

Coming soon...
RUNNING PIPELINES ALGORITHMS OVERVIEW OTHER RESOURCES
Computing Options
mkfastq
count (Spatial Gene Expression)
aggr
Understanding Output
Image Processing
Gene Expression
Questions & Answers
Datasets



Loupe Browser

The 10x easy-to-use visualization software that lets you quickly and interactively find significant genes, cell types, and substructure within your spatial gene expression data. No programming required.

INTRODUCTION DOWNLOAD TUTORIALS
What is Loupe Browser? Download Link
Installation
Navigation
Spatial Gene Expression
Manual Slide Alignment