10x Genomics
Chromium Single Cell Immune Profiling

Cell Ranger3.0, printed on 12/21/2024

What is Loupe Browser?

Introduction

Loupe Browser (previously named Loupe Cell Browser) is a desktop application that provides interactive visualization functionality to analyze data from different 10x Genomics solutions. Loupe Browser allows you to easily interrogate different views of your 10x data to quickly gain insights into the underlying biology.

Loupe Browser supports the analysis of the following types of data:

Chromium Platform

• 3’and 5’ single cell gene expression data.
• Feature Barcode data including those interrogating cell surface proteins, antigen specificity and CRISPR perturbations.
• Overlaying V(D)J clonotype information on top of 5’ single cell gene expression data.
• Single cell ATAC data.

Visium Platform

• Spatial gene expression data.

For more information, see Single Cell Gene Expression Loupe Section.

Installing Loupe Browser

To use Loupe Browser, follow the directions on the Installation page to download and install the software on either macOS or Windows.

Loupe Browser Single Cell Gene Expression Tutorials

Loupe Browser provides many powerful analysis capabilities. To learn how to use Loupe Browser to analyze your gene expression data, review the Single Cell Gene Expression Loupe Tutorial.