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10x Genomics
Chromium Single Cell Immune Profiling

System Requirements

Cell Ranger

Cell Ranger pipelines run on Linux systems that meet these minimum requirements:

The pipelines also run on clusters that meet these additional minimum requirements:

Software Dependencies

Most software dependencies come bundled in the Cell Ranger package. However, cellranger mkfastq also requires

Resource Limits

LimitRecommendation
user open files 16k
system max files 10k per GB RAM available to Cell Ranger
user processes 64 per core available to Cell Ranger