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Cell Ranger


10x Genomics
Chromium Single Cell Gene Expression

Getting Started with Cell Ranger

Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis.

This getting started guide is a series of short tutorials designed to help you install and run the Cell Ranger pipelines on your system. It does not comprehensively cover all of the options and analysis cases Cell Ranger can handle, but provides a starting point and tips for further analysis.