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Space Ranger
Introduction
What is Space Ranger?
Glossary
Downloads
Download Links
System Requirements
Installing Space Ranger
Release Notes
Running Pipelines
Computing Options
Input Recommendations
mkfastq
Specifying Input FASTQs
count (Spatial Gene Expression)
Troubleshooting
Understanding Outputs
Overview
Web Summary
Analysis
Matrices
Images
BAM
Molecule Info (H5)
GEX/Image Metrics
Algorithms Overview
Image Processing
Gene Expression
Map of count Pipeline
Advanced
Matrix HDF5 Format
Job Submission Mode
Cluster Mode
Using bcl2fastq
Custom References
Pipeline Monitoring UI
Pipestance Structure
Secondary Analysis in R
Loupe
Introduction
What is Loupe Browser?
Download
Download Link
Installing Loupe Browser
Tutorials
Navigation
Spatial Gene Expression
Manual Alignment
10x Genomics
Visium Spatial Gene Expression
Space Ranger1.0, printed on 04/26/2024
Release Notes for Space Ranger 1.0.0
Initial release.
1.1
1.2
1.3
2.0
Space Ranger v
1.0
