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10x Genomics
Chromium Single Cell CNV

What is Loupe scDNA Browser?


Loupe scDNA Browser is a desktop application for Windows and MacOS that allows you to visualize copy number information produced by analyzing Chromiumâ„¢ Single Cell DNA data with the Cell Ranger DNA pipeline. You can use it to quickly evaluate copy number information at single-cell resolution. Loupe is named for a jeweler's loupe, which is used to inspect gems.

10x Chromium Sequencer 10x Cell Ranger DNA 10x Loupe scDNA Browser
Cell Suspension Barcoding & Library
Sequence library Pipelines Analysis & Visualization
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Within Loupe scDNA Browser, you will be able to quickly characterize genomic heterogeneity based on single cell copy number profiles, explore groups of cells with similar profiles, and zoom into regions of interest to evaluate copy number calls.

To find out how to use Loupe scDNA Browser to explore your copy number data, start the tutorial.