Cell Ranger DNA1.0, printed on 12/20/2024
Loupe scDNA Browser is a desktop application for Windows and MacOS that allows you to visualize copy number information produced by analyzing Chromium™ Single Cell DNA data with the Cell Ranger DNA pipeline. You can use it to quickly evaluate copy number information at single-cell resolution. Loupe is named for a jeweler's loupe, which is used to inspect gems.
| 10x Chromium | Sequencer | 10x Cell Ranger DNA | 10x Loupe scDNA Browser | |
|---|---|---|---|---|
| Cell Suspension | Barcoding & Library Construction |
Sequence library | Pipelines | Analysis & Visualization |
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Within Loupe scDNA Browser, you will be able to quickly characterize genomic heterogeneity based on single cell copy number profiles, explore groups of cells with similar profiles, and zoom into regions of interest to evaluate copy number calls.
To find out how to use Loupe scDNA Browser to explore your copy number data, start the tutorial.