Cell Ranger ATAC, printed on 07/05/2020
The Chromium Single Cell ATAC Software Suite is a set of software applications for analyzing and visualizing single cell chromatin accessibility data produced by the 10x Chromium Platform. The software suite includes Cell Ranger ATAC and Loupe Browser:
Our set of analysis pipelines that perform identification of open chromatin regions, motif annotation, and differential accessibility analysis for Single Cell ATAC data.
| INTRODUCTION | DOWNLOAD | RUNNING PIPELINES |
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What is Cell Ranger ATAC? |
Download Links System Requirements Installation |
Computing Options mkfastq count aggr reanalyze Understanding Output |
| ALGORITHMS OVERVIEW | OTHER RESOURCES | |
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Chromatin Accessibility |
Questions & Answers Datasets |
Our easy-to-use visualization software that displays peak profiles representing regions of accessible chromatin in cell clusters and differential accessibility analysis results, for interactive interrogation of Single Cell ATAC data. No programming required.
| INTRODUCTION | DOWNLOAD | TUTORIAL |
| What is Loupe Browser? Differences From GEX |
Download Link Installation |
Getting Started Tutorial |