Cell Ranger ATAC , printed on 12/12/2018
The Chromium Single Cell ATAC Software Suite is a complete package for analyzing and visualizing single cell chromatin accessibility data produced by the Chromium Single Cell ATAC Solution on the 10x Chromium Platform. The package includes:
Cell Ranger ATAC: Pipelines
A set of analysis pipelines that performs identification of open chromatin regions, motif annotation, and differential accessibility analysis for Single Cell ATAC data.
Loupe Cell Browser
Visualization software that displays peak profiles representing regions of accessible chromatin in cell clusters and differential accessibility analysis results for interactive interrogation of Single Cell ATAC data.