Cell Ranger ATAC, printed on 11/17/2024
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Documentation and downloads for 10x Genomics software products are moving to our redesigned software support site. This site is being maintained temporarily to support Cell Ranger ATAC, Cell Ranger ARC, and older versions of Cell Ranger, Space Ranger, Loupe Browser, and all versions of Loupe V(D)J Browser. |
Cell Ranger ATAC and Loupe Browser are software applications for analyzing and visualizing Single Cell ATAC data produced by the 10x Genomics Chromium platform.
Analysis pipelines that perform identification of open chromatin regions, motif annotation, and differential accessibility analysis for Chromium Single Cell ATAC data.
| INTRODUCTION | DOWNLOAD | RUNNING PIPELINES |
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What is Cell Ranger ATAC? |
Download Links System Requirements Installation |
Computing Options mkfastq count aggr reanalyze Understanding Output |
| ALGORITHMS OVERVIEW | OTHER RESOURCES | |
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Chromatin Accessibility |
Questions & Answers Datasets |
Easy-to-use software for interactive visualization of Chromium Single Cell ATAC data. No programming required.
| INTRODUCTION | TUTORIAL |
| What is Loupe Browser? Differences From GEX Download | Getting Started Tutorial |