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Cell Ranger


10x Genomics
Chromium Single Cell Immune Profiling

Choosing a Cell Ranger Pipeline

Cell Ranger provides a set of analysis pipelines for processing Chromium Next GEM Single Cell Immune Profiling data to align reads, generate Feature Barcode (FB) matrices, perform clustering and secondary analyses, and more.

Documentation by library type Cell Ranger pipeline
V(D)J only vdj
Gene Expression only count
Antibody Capture ± Gene Expression count
CRISPR (FB) + Gene Expression count
Gene Expression + V(D)J ± FB multi
Gene Expression + V(D)J + Antigen Capture (BEAM) ± Antibody Capture multi

For assistance with a specific library combination not documented here, please contact [email protected]