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10x Genomics
Single Cell Multiome ATAC + Gene Exp.

Overview

The Single Cell Multiome ATAC + Gene Expression software suite consists of Cell Ranger ARC for the analysis and Loupe Browser for the visualization of chromatin accessibility and 3' gene expression data from the same cell produced by the 10x platform.

Cell Ranger ARC

The set of analysis pipelines in this suite perform sample demultiplexing, barcode processing, identification of open chromatin regions, and simultaneous counting of transcripts and peak accessibility in single cells. Additionally, the pipelines perform secondary analyses like dimensionality reduction, clustering, differential analysis, and feature linkage between peaks and genes that aid in data interpretation.

INTRODUCTION DOWNLOAD TUTORIALS
What is Cell Ranger ARC?
Download Links
System Requirements
Installation

Coming soon...
RUNNING PIPELINES ALGORITHMS OVERVIEW OTHER RESOURCES
Computing Options
mkfastq
count
Understanding Output
Multiome ATAC + Gene Expression
Feature Linkage
Questions & Answers
Datasets



Loupe Browser

Our easy-to-use visualization software that lets you quickly and interactively find significant genes, cell types, and substructure within your single cell data. No programming required.

INTRODUCTION DOWNLOAD TUTORIAL
What is Loupe Browser? Download Link
Installation
Getting Started Tutorial