Cell Ranger ARC, printed on 01/31/2023
The Single Cell Multiome ATAC + Gene Expression software suite consists of Cell Ranger ARC for the analysis and Loupe Browser for the visualization of chromatin accessibility and 3' gene expression data from the same cell produced by the 10x platform.
The set of analysis pipelines in this suite perform sample demultiplexing, barcode processing, identification of open chromatin regions, and simultaneous counting of transcripts and peak accessibility in single cells. Additionally, the pipelines perform secondary analyses like dimensionality reduction, clustering, differential analysis, and feature linkage between peaks and genes that aid in data interpretation.
| INTRODUCTION | DOWNLOAD | TUTORIALS |
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What is Cell Ranger ARC? |
Download Links System Requirements Installation |
Custom Reference for Rat |
| RUNNING PIPELINES | ALGORITHMS OVERVIEW | OTHER RESOURCES |
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Computing Options mkfastq count aggr reanalyze Understanding Output |
Multiome ATAC + Gene Expression Feature Linkage |
Questions & Answers Datasets |
10x Genomics Cloud is the recommended platform for running single cell pipelines for most new customers. Use your web browser to easily process FASTQ files into Cell Ranger ARC output files. Currently available only in the United States and Canada.
Our easy-to-use visualization software that lets you quickly and interactively
find significant genes, cell types, and substructure within your single cell
data. No programming required.
| INTRODUCTION | TUTORIAL |
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What is Loupe Browser?
Download |
Getting Started Tutorial |