Supported Pipelines and Products


Analysis Pipeline Status Version Library Types
Cell Ranger count Supported v6.0
v5.0
v4.0
v3.1
Single Cell 3' Gene Expression
Single Cell 3' Gene Expression LT
Single Cell 5' Gene Expression
Cell Ranger aggr Supported v6.0
v5.0
v4.0
v3.1
Single Cell 3' Gene Expression
Single Cell 3' Gene Expression LT
Single Cell 5' Gene Expression
Antibody Capture
CRISPR Guide Capture
Custom library
Cell Ranger reanalyze Supported v6.0
v5.0
v4.0
v3.1
Single Cell 3' Gene Expression
Single Cell 3' Gene Expression LT
Single Cell 5' Gene Expression
Cell Ranger V(D)J Supported v6.0
v5.0
v4.0
v3.1
Single Cell V(D)J
Cell Ranger count (Feature Barcode data) Supported v6.0
v5.0
v4.0
v3.1
Single Cell 3' Gene Expression
Single Cell 3' Gene Expression LT
Single Cell 5' Gene Expression
Antibody Capture
CRISPR Guide Capture
Custom library
Cell Ranger multi Coming soon - Single Cell 3' Gene Expression
Single Cell 3' Gene Expression LT
Single Cell 5' Gene Expression
Single Cell V(D)J
Antibody Capture
CRISPR Guide Capture
Custom library
Multiplexing Capture

More on Supported Pipelines