Cell Ranger DNA, printed on 03/24/2023
| Analysis software for the 10x Genomics single cell DNA product is no longer supported. Raw data processing pipelines and visualization tools are available for download and can be used for analyzing legacy data from 10x Genomics kits in accordance with our end user licensing agreement without support. |
This section contains tutorials for analysis of your Single Cell CNV data using 10x Cell Ranger DNA and Loupe scDNA Browser.
Start Here: Loupe scDNA Browser Tutorial
Orient yourself to the major features of Loupe scDNA Browser by visualizing a female MKN-45 gastric adenocarcinoma cell line line spiked in to a male diploid cell line.
Understand Genomic Heterogeneity in Cancer
Reanalyze single cell CNVs from a melanoma cell line (COLO829) and visualize heterogeneity in an aggregated breast cancer dataset using Cell Ranger DNA 1.1 and Loupe scDNA Browser 1.1.