10x Genomics
Single Cell CNV

Cell Ranger DNA, printed on 06/01/2020

Tutorials for Working with Single Cell CNV Data

Analysis Using 10x Software

This section contains tutorials for analysis of your Single Cell CNV data using 10x Cell Ranger DNA and Loupe scDNA Browser.

• Start Here: Loupe scDNA Browser Tutorial
  Orient yourself to the major features of Loupe scDNA Browser by visualizing a female MKN-45 gastric adenocarcinoma cell line line spiked in to a male diploid cell line.

• Understand Genomic Heterogeneity in Cancer
  Reanalyze single cell CNVs from a melanoma cell line (COLO829) and visualize heterogeneity in an aggregated breast cancer dataset using Cell Ranger DNA 1.1 and Loupe scDNA Browser 1.1.