Long Ranger2.1, printed on 11/21/2024
| Analysis software for 10x Genomics linked read products is no longer supported. Raw data processing pipelines and visualization tools are available for download and can be used for analyzing legacy data from 10x Genomics kits in accordance with our end user licensing agreement without support. |
Loupe is a genome browser designed to visualize the Linked-Read data produced by the 10x Chromium Platform. Loupe is named for a jeweler's loupe, which is used to inspect gems.
Loupe is a desktop application for Windows, Mac, and Linux. It loads the .loupe files produced by the Long Ranger pipeline. Its features include:
Summary View
At-a-glance
dashboard summarizing performance of the sequencing run and the
Chromium partitioning and barcoding process.
Haplotype Browser
A
genome browser that shows how the Chromium linked-read data resolves
called SNPs, indels, and structural variants onto multi-megabase phase blocks.
Structural Variants
Visualization
of the barcode overlap evidence for the large-scale structural variants called
by Long Ranger.
Linked-Reads
Low-level
visualization of the underlying barcoded, linked-read data and the long
template molecules from which they originated.
Phase Blocks
Genome-wide view of the phase blocks.