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10x Genomics
Chromium Genome & Exome

What is Long Ranger?

Long Ranger is a set of analysis pipelines that processes Chromium sequencing output to align reads and call and phase SNPs, indels, and structural variants. There are five main pipelines, each triggered by a longranger command:

These pipelines combine Chromium-specific algorithms with widely used components such as BWA (used within the Lariat aligner) and GATK. Output is delivered in standard BAM, VCF, and BEDPE formats that are augmented with long range information.

Supported Sequencing Workflows

Long Ranger supports the following Chromium sequencing workflows: