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10x Genomics
GemCode Genome & Exome

What is Long Ranger?

Long Ranger is a set of analysis pipelines that processes GemCode sequencing output to align reads and call and phase SNPs, indels, and structural variants. There are four main pipelines, each triggered by a longranger command:

These pipelines combine GemCode-specific algorithms with widely used components such as BWA, Freebayes, and GATK. Output is delivered in standard BAM, VCF, and BEDPE formats that are augmented with long range information.

Supported Sequencing Workflows

Long Ranger supports the following GemCode sequencing workflows: