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10x Genomics
Single Cell ATAC

Cell Ranger ATAC , printed on 04/02/2025

SC_ATAC_REANALYZER_CSSC_ATAC_REANALYZERATAC_REANALYZER_PREFLIGHTATAC_REANALYZER_PREFLIGHT_LOCALCLOUPE_PREPROCESSCOPY_INPUT_OUTPUTCREATE_REANALYSIS_WEBSUMMARYFILTER_PEAK_MATRIXGENERATE_PEAK_MATRIXMERGE_ANALYSIS_METRICSPARSE_ANALYSIS_INPUTSREGENERATE_ANALYSIS_METRICS_SC_ATAC_ANALYZERANALYZER_PREFLIGHTCLUSTER_CELLSCOMBINE_CLUSTERINGPERFORM_DIFFERENTIAL_ANALYSISPROJECT_TSNEREDUCE_DIMENSIONSRUN_GRAPH_CLUSTERINGSUMMARIZE_ANALYSIS_PEAK_ANNOTATORANNOTATE_PEAKSCOMPUTE_GC_DISTRIBUTIONGENERATE_TF_MATRIXSCAN_MOTIFS_TOGGLE_CELL_CALLERDECIDE_CELL_CALLERSELECT_CELLS_PRODUCE_CELL_BARCODESDETECT_CELL_BARCODESMERGE_CELL_METRICSMERGE_EXCLUDED_BARCODESREMOVE_BARCODE_MULTIPLETSREMOVE_GEL_BEAD_DOUBLET_BARCODESREMOVE_LOW_TARGETING_BARCODES
←  SC_ATAC_REANALYZER_CS

Wraps the main pipeline to produce the final output files