Long Ranger1.3, printed on 07/04/2020
Loupe requires and runs on
.loupe files generated by the longranger pipeline. The Loupe file for a given sample can be found in the
outs subfolder of the sample folder output by longranger.
Once Loupe is started, click on the open file button to select a Loupe file to load. You can load a different file at any time by clicking the
Open Files... link in the upper-right corner of the window.
Loupe provides a search bar at the top of the window for genome navigation. The search bar accepts gene names or loci in
chr:start-end format. Loupe supports multiple search ranges, separated by spaces, commas, or semicolons. Loupe will maintain the previously selected loci ranges (if possible) when switching between views. Valid searches include:
ELM4,ALK: view EML4 and ALK
chr1:5000000: display region around chr:5000000
chr1:5000000,BRCA1,chr3:7000000-8000000: display regions from three chromosomes
chrXX+will be interpreted as a gene