10x Genomics
Single Cell Immune Profiling

Cell Ranger, printed on 04/25/2024

Tutorials for Working with Immune Profiling Data

Analysis Using 10x Software

This section contains tutorials for analysis of Immune Profiling data using 10x Cell Ranger, Loupe Cell Browser, and Loupe V(D)J Browser.

• Loupe V(D)J Browser
  An interactive visualization tool to investigate clonotypes, identify significant sequence mismatches, and verify read support from single cell data.

• Loupe Browser
  Quickly and interactively find significant genes, cell types, and substructure within single cell data. No programming is required.

• Characterization of the Tumor Microenvironment
  Interactive analysis and visualization of data in the Tumor Microenvironment Application Note using the Loupe Cell and Loupe V(D)J Browsers. It includes an example of how to annotate cells clusters.