Sample Index Sets for Single Cell V(D)J

Specifications, Last Modified on April 28, 2020, Permalink

Sample indexes for use with the Chromium Single Cell Immune Profiling Solution each comprise four oligonucleotides. When analyzing sequencing data for a given sample, you must combine the reads associated with all four of the oligonucleotides in the sample index.

Please note that the sample index plate used for V(D)J Enriched and 5’ Gene Expression libraries are different from the sample index plate used for 5' Cell Surface Protein and Antigen Specificity libraries.

5' v1.1 Gene Expression and V(D)J enriched libraries are made using the following sample index plate:

5' v1.1 Cell Surface Protein and Antigen Specificity libraries are made using the following sample index plate:

5' v1 Gene Expression and V(D)J enriched libraries are made using the following sample index plate:

5' v1 Cell Surface Protein and Antigen Specificty libraries are made using the following sample index plate: