Sample Index Sets for Single Cell Multiome ATAC + GEX libraries

Specifications, Last Modified on September 9, 2020, Permalink

Chromium Single Cell Multiome Gene Expression Libraries

Dual index kit, TT, Set A is used with Chromium Single Cell Multiome Gene Expression to generate dual index libraries.

Each well of a dual index plate contains a mix of one unique i7 and one unique i5 sample index.

The files below contain the mappings from the sample index names to the associated set of Index (i7) and Index 2 (i5) oligonucleotides. Please see our software support site for more information.

Please note that the sample index plate used for Multiome Gene Expression libraries is different from the sample index plate used for Mutiome ATAC libraries.

The files below contain the mappings from the sample index names to the associated set of oligonucleotides:

Chromium Single Cell Multiome ATAC libraries

Single Index Kit N, Set A is used to generate Chromium Single Cell Multiome ATAC libraries.

Each well of a single index plate comprises four oligonucleotides. When analyzing sequencing data for a given sample, you must combine the reads associated with all four of the oligonucleotides in the sample index.

Please note that the sample index plate used for Multiome ATAC libraries is different from the sample index plate used for Mutiome Gene Expression libraries.

The files below contain the mappings from the sample index names to the associated set of four oligonucleotides: