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10x Genomics
Chromium Single Cell Gene Expression

Cell Ranger Metrics

Cell Ranger computes sequencing quality and application results metrics for each supported library type. Supported library types are "Gene Expression" for standard gene expression data, and the Feature Barcoding-specific library types "Antibody Capture", "CRISPR Guide Capture", and "Custom" (user-defined assays that are neither Antibody nor CRISPR). Feature Barcoding metrics will be computed and displayed only when one of these library types was used in the assay.

Details of the metrics computed for each supported library are described here: Gene Expression Metrics, Antibody Metrics, CRISPR Metrics, and Custom Metrics.