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10x Genomics
Single Cell Gene Expression

SC_RNA_AGGREGATOR_CSCHECK_INVARIANTSCHECK_MOLECULE_INFO_VERSIONCLOUPE_PREPROCESSPARSE_CSVSC_RNA_AGGREGATORMERGE_MOLECULESNORMALIZE_DEPTHSC_RNA_ANALYZERANALYZER_PREFLIGHTCHOOSE_DIMENSION_REDUCTIONCHOOSE_DIMENSION_REDUCTION_OUTPUTCOMBINE_CLUSTERINGCORRECT_CHEMISTRY_BATCHMERGE_CLUSTERSPREPROCESS_MATRIXRUN_DIFFERENTIAL_EXPRESSIONRUN_FBPCARUN_GRAPH_CLUSTERINGRUN_KMEANSRUN_MULTIGENOME_ANALYSISRUN_PCARUN_TSNESUMMARIZE_ANALYSISSETUP_SAMPLESSUMMARIZE_AGGREGATED_REPORTSWRITE_MATRICES
  SC_RNA_AGGREGATOR_CS

This is the main Cell Ranger pipeline that performs multiple GEM groups aggregation and generates feature-barcode matrices and gene expression analysis. This outer wrapper pipeline prepares files for final output.