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10x Genomics
Single Cell CNV

Cell Ranger DNA , printed on 03/29/2025

CNV_CALLER_SINGLECELL_CSCNV_CALLER_SINGLECELLCNV_CALLER_PREFLIGHTCNV_CALLER_PREFLIGHT_LOCALDLOUPE_PREPROCESS_BREAKPOINT_PIPELINEAGGREGATE_NODES_NODE_BREAKPOINT_CALLERCREATE_CNV_TRACKS_AND_BEDDETECT_BREAKPOINTSESTIMATE_CNV_CONFIDENCE_NODE_NORMALIZERESTIMATE_NORMALIZATION_PARAMETERSNORMALIZE_PROFILESREPORT_NORMALIZATION_SC_BREAKPOINT_CALLERCREATE_CNV_TRACKS_AND_BEDDETECT_BREAKPOINTSESTIMATE_CNV_CONFIDENCE_SC_NORMALIZERESTIMATE_NORMALIZATION_PARAMETERSNORMALIZE_PROFILESREPORT_NORMALIZATION_TREE_BUILDERCLUSTER_CELLSCREATE_NODE_PROFILES_POSTPROCESSINGCOMPILE_CNV_DATAMAKE_ALARMSMAKE_WEBSUMMARY_PROCESS_READSALIGN_READSMARK_DUPLICATESMERGE_POS_SORTEDSETUP_CHUNKSSHARD_READSWRITE_POS_SORTED_REPORTER_SINGLECELLMAKE_PROFILES_GENOME_ANNOTATORAGGREGATE_TRACKSALIGNANALYZE_OUTPUTCREATE_GENOME_TRACKSSAMPLE_REFERENCE
←  CNV_CALLER_SINGLECELL_CS

This wrapper around the main pipeline produces the final output files.