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10x Genomics
Single Cell CNV

Cell Ranger DNA , printed on 04/02/2025

CNV_CALLER_SINGLECELL_CSCNV_CALLER_SINGLECELLCNV_CALLER_PREFLIGHTCNV_CALLER_PREFLIGHT_LOCALDLOUPE_PREPROCESS_ALIGNERALIGNATTACH_BCSCOPY_BAMESTIMATE_DIFFUSION_DUPSMARK_DUPLICATESSETUP_CHUNKSSORT_BY_POSTRIM_READS_BCSORTERBUCKET_BY_BCSORT_BY_BC_BREAKPOINT_PIPELINEAGGREGATE_NODES_NODE_BREAKPOINT_CALLERCREATE_CNV_TRACKS_AND_BEDDETECT_BREAKPOINTSESTIMATE_CNV_CONFIDENCE_NODE_NORMALIZERESTIMATE_NORMALIZATION_PARAMETERSNORMALIZE_PROFILESREPORT_NORMALIZATION_SC_BREAKPOINT_CALLERCREATE_CNV_TRACKS_AND_BEDDETECT_BREAKPOINTSESTIMATE_CNV_CONFIDENCE_SC_NORMALIZERESTIMATE_NORMALIZATION_PARAMETERSNORMALIZE_PROFILESREPORT_NORMALIZATION_TREE_BUILDERCLUSTER_CELLSCREATE_NODE_PROFILES_CELL_DETECTORDETECT_CELL_BARCODES_POSTPROCESSINGCOMPILE_CNV_DATAMAKE_ALARMSMAKE_WEBSUMMARYREPORT_BASIC_SUMMARY_REPORTER_SINGLECELLMAKE_PROFILESREPORT_BASICREPORT_SINGLECELL_GENOME_ANNOTATORAGGREGATE_TRACKSALIGNANALYZE_OUTPUTCREATE_GENOME_TRACKSSAMPLE_REFERENCE
←  CNV_CALLER_SINGLECELL_CS

This wrapper around the main pipeline produces the final output files.