Single Cell ATAC Datasets

Chromium Next GEM ATAC Demonstration (v1.1 Chemistry)

Cell Ranger ATAC 2.0.0

• 500 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (Next GEM v1.1)
• 1k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (Next GEM v1.1)
• 5k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (Next GEM v1.1)
• 10k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (Next GEM v1.1)
• 500 Peripheral blood mononuclear cells (PBMCs) from a healthy donor (Next GEM v1.1)
• 1k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (Next GEM v1.1)
• 5k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (Next GEM v1.1)
• 10k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (Next GEM v1.1)

Cell Ranger ATAC 1.2.0

• 500 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (v1.0)
• 500 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (Next GEM v1.1)
• 1k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (v1.0)
• 1k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (Next GEM v1.1)
• 5k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (v1.0)
• 5k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (Next GEM v1.1)
• 10k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (v1.0)
• 10k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (Next GEM v1.1)
• 500 Peripheral blood mononuclear cells (PBMCs) from a healthy donor (v1.0)
• 500 Peripheral blood mononuclear cells (PBMCs) from a healthy donor (Next GEM v1.1)
• 1k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (v1.0)
• 1k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (Next GEM v1.1)
• 5k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (v1.0)
• 5k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (Next GEM v1.1)
• 10k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (v1.0)
• 10k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (Next GEM v1.1)

Cell Ranger ATAC 1.1.0

• 500 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (v1.0)
• 500 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (Next GEM v1.1)
• 1k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (v1.0)
• 1k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (Next GEM v1.1)
• 5k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (v1.0)
• 5k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (Next GEM v1.1)
• 10k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (v1.0)
• 10k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells (Next GEM v1.1)
• 500 Peripheral blood mononuclear cells (PBMCs) from a healthy donor (v1.0)
• 500 Peripheral blood mononuclear cells (PBMCs) from a healthy donor (Next GEM v1.1)
• 1k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (v1.0)
• 1k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (Next GEM v1.1)
• 5k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (v1.0)
• 5k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (Next GEM v1.1)
• 10k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (v1.0)
• 10k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (Next GEM v1.1)

Single Cell ATAC Demonstration

Cell Ranger ATAC 1.2.0

• 500 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells
• 1k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells
• 5k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells
• 10k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells
• 5k Peripheral blood mononuclear cells (PBMCs) from a healthy donor
• 10k Peripheral blood mononuclear cells (PBMCs) from a healthy donor
• Fresh cortex, hippocampus, and ventricular zone from embryonic mouse brain (E18)
• Dissociated and cryopreserved cortex, hippocampus, and ventricular zone cells from embryonic mouse brain (E18)
• Flash frozen cortex, hippocampus, and ventricular zone from embryonic mouse brain (E18)
• Fresh cortex from adult mouse brain (P50)

Cell Ranger ATAC 1.1.0

• 500 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells
• 1k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells
• 5k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells
• 10k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells
• 5k Peripheral blood mononuclear cells (PBMCs) from a healthy donor
• 10k Peripheral blood mononuclear cells (PBMCs) from a healthy donor
• Fresh cortex, hippocampus, and ventricular zone from embryonic mouse brain (E18)
• Dissociated and cryopreserved cortex, hippocampus, and ventricular zone cells from embryonic mouse brain (E18)
• Flash frozen cortex, hippocampus, and ventricular zone from embryonic mouse brain (E18)
• Fresh cortex from adult mouse brain (P50)

Cell Ranger ATAC 1.0.1

• 500 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells
• 1k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells
• 5k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells
• 10k 1:1 mixture of fresh frozen human (GM12878) and mouse (A20) cells
• 5k Peripheral blood mononuclear cells (PBMCs) from a healthy donor
• 10k Peripheral blood mononuclear cells (PBMCs) from a healthy donor