# Instructions to Download and Process BAM files of 1.3 Million Brain Cells

BAM files have been deposited with GEO (id: GSE93421) and can be downloaded from SRA (id: SRP096558). They can be downloaded free of charge.

• An example of wget command: wget http://sra-download.ncbi.nlm.nih.gov/srapub_files/SRR5167880_E18_20160930_Neurons_Sample_01.bam
• An example of aria2c command: aria2c http://sra-download.ncbi.nlm.nih.gov/srapub_files/SRR5167880_E18_20160930_Neurons_Sample_01.bam
• An example of a shell script to download all the files using aria2c using the maximum allowable number of connections: aria2c -x16 -i url_list
• To put the script in the the background, add & disown to the end of the command.