Sample Index Sets for Single Cell 3'

Specifications, Last Modified on April 28, 2020, Permalink

Sample indexes for use with the Chromium Single Cell 3' Gene Expression Solution each comprise four oligonucleotides. When analyzing sequencing data for a given sample, you must combine the reads associated with all four of the oligonucleotides in the sample index.

The files below contain the mappings from the sample index names to the associated set of four oligonucleotides:

Chromium Single Cell v3.1 uses the following i7 sample index set:

Chromium Single Cell (v2 and v3) share the same i7 sample index set: