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10x Genomics
Genome & Exome

BASIC_CSBASICBASIC_PREFLIGHTBASIC_PREFLIGHT_LOCALMAKE_UNALIGNED_OUTPUTSETUP_CHUNKSTRIM_READS_SORT_FASTQ_BY_BARCODEBUCKET_FASTQ_BY_BCSORT_FASTQ_BY_BC
  BASIC_CS

This pipeline performs barcode processing and outputs barcode-attached reads in FASTQ or unaligned BAM formats. This outer wrapper pipeline prepares files for final output.